PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001877-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 345aa    MW: 38273.5 Da    PI: 6.7308
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001877-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.11.1e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv++++++G g+W++ ++  g++R++k+c++rw +yl
    NNU_001877-RA 14 KGPWTPEEDQKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding54.72.3e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
    NNU_001877-RA  67 RGKFSPEEEQTILNLHSFLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.275961IPR017930Myb domain
SuperFamilySSF466891.3E-3211108IPR009057Homeodomain-like
SMARTSM007172.4E-161363IPR001005SANT/Myb domain
PfamPF002491.5E-181461IPR001005SANT/Myb domain
CDDcd001673.20E-131661No hitNo description
PROSITE profilePS5129426.04262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-2865117IPR009057Homeodomain-like
SMARTSM007172.3E-1666114IPR001005SANT/Myb domain
PfamPF002493.1E-1667112IPR001005SANT/Myb domain
CDDcd001673.14E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLVQYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPEEEQTILN LHSFLGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFSNLQQLL ALANLREFMD QQPWEEQAVR LQAEAFQMAK LQYCQHLLQT  180
XAATVPASSS SNSLSSMTDM ESFNLLNSIS SFKDNPVLGS SPLDNSTLSS LGTAITSQSV  240
LDPQVHFSHS PNLKPPCGFX THLTSEIAQG SDYTAGFSQA ESSPQSPWFP HSPSPPLLPP  300
QPVPSTTQTA ISNPGDACST SSYGGGTPFW PELLLDDESF IQEIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267736.10.0PREDICTED: transcription factor MYB39-like
TrEMBLA0A068TZV31e-156A0A068TZV3_COFCA; Uncharacterized protein
STRINGVIT_07s0141g00100.t011e-150(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-103myb domain protein 93